TEgenomeSimulator
=================

Overview
--------

.. figure:: images/tegenomesimulator_overview.png
   :alt: TEgenomeSimulator
   :width: 400px
   :height: 400px

* A tool to simulate transposable element (TE) mutation and insertion into a random-synthesised or user-provided genome.
* The resulting simulated genome can be used for benchmarking TE detection tools.
* Three running modes:
    * Mode 0: Random Synthesized Genome mode.
    * Mode 1: Custom Genome mode.
    * Mode 2: TE Composition Approximation mode.
* Accessible at: https://github.com/Plant-Food-Research-Open/TEgenomeSimulator
* Funding: KRIP Genome Landscape Objective led by Susan Thomson